{ "_id": "6abe2bd099f7aa8c6aa532df", "Package": "ProliferativeIndex", "Title": "Calculates and Analyzes the Proliferative Index", "Version": "1.0.1", "Authors@R": "c(person(\"Brittany\", \"Lasseigne\", role = c(\"aut\", \"cre\"), \nemail = \"brittany.lasseigne@gmail.com\"),\nperson(\"Ryne\", \"Ramaker\", role = \"aut\", email = \"ryneramaker@gmail.com\"))", "Description": "Provides functions for calculating and analyzing the\nproliferative index (PI) from an RNA-seq dataset. As described\nin Ramaker & Lasseigne, et al. bioRxiv, 2016\n.", "License": "MIT + file LICENSE", "LazyData": "true", "VignetteBuilder": "knitr", "RoxygenNote": "6.0.1", "Repository": "https://blasseigne.r-universe.dev", "Date/Publication": "2018-08-14 17:06:23 UTC", "RemoteUrl": "https://github.com/blasseigne/proliferativeindex", "RemoteRef": "HEAD", "RemoteSha": "8e85e9c7c682361a81faabeb2bedf50d7f469448", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-01 09:41:51 UTC", "User": "root" }, "Author": "Brittany Lasseigne [aut, cre],\nRyne Ramaker [aut]", "Maintainer": "Brittany Lasseigne ", "_user": "blasseigne", "_type": "src", "_file": "ProliferativeIndex_1.0.1.tar.gz", "_fileid": "https://r2.ropensci.org/96f8ea231552a896835640995652a4aba252d3a81d253ef014139f5b7accbd33", "_filesize": 1402627, "_sha256": "96f8ea231552a896835640995652a4aba252d3a81d253ef014139f5b7accbd33", "_expires": "2027-01-09T09:45:49.000Z", "_created": "2026-10-01T09:41:51.000Z", "_published": "2026-10-01T09:45:52.118Z", "_jobs": [ { "job": 110311032382, "time": 119, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11152529494" }, { "job": 110311032404, "time": 114, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11152339107" }, { "job": 110311032458, "time": 195, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "11153056451" }, { "job": 110311032396, "time": 137, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "11152418966" }, { "job": 110310002646, "time": 174, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11152942388" }, { "job": 110311032491, "time": 92, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "11151989218" }, { "job": 110311032499, "time": 70, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11153240047" }, { "job": 110311032598, "time": 60, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "11152957376" }, { "job": 110311032623, "time": 83, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11152488932" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/blasseigne/actions/runs/36844081505", "_status": "success", "_upstream": "https://github.com/blasseigne/proliferativeindex", "_commit": { "id": "8e85e9c7c682361a81faabeb2bedf50d7f469448", "author": "blasseigne ", "committer": "blasseigne ", "message": "fixed vignette table header problems\n", "time": 1534266383 }, "_maintainer": { "name": "Brittany Lasseigne", "email": "brittany.lasseigne@gmail.com", "login": "blasseigne", "description": "Associate Professor at UAB SOM\nwww.lasseigne.org\nLab repos at team lasseignelab", "uuid": 6486454 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.0.0", "role": "Depends" }, { "package": "graphics", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" } ], "_owner": "blasseigne", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_topics": [ "cancer", "cancer-genomics", "gene-expression", "genomics", "index", "metagene" ], "_stars": 0, "_contributors": [ { "user": "blasseigne", "count": 11, "uuid": 6486454 } ], "_userbio": { "uuid": 6486454, "type": "user", "name": "Brittany N. Lasseigne, PhD", "followers": 10, "description": "Associate Professor at UAB SOM\r\nwww.lasseigne.org\r\nLab repos at team lasseignelab" }, "_downloads": { "count": 207, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/ProliferativeIndex" }, "_mentions": 1, "_devurl": "https://github.com/blasseigne/proliferativeindex", "_searchresults": 11, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/ProliferativeIndex.html", "extra/readme.html", "extra/readme.md", "LICENSE" ], "_homeurl": "https://github.com/blasseigne/proliferativeindex", "_realowner": "blasseigne", "_cranurl": true, "_releases": [ { "version": "1.0.0", "date": "2017-02-16" }, { "version": "1.0.1", "date": "2018-08-14" } ], "_exports": [ "calculatePI", "compareModeltoPI", "comparePI", "readDataForPI" ], "_datasets": [ { "name": "exReadDataObj", "title": "TCGA ACC data set output from readDataForPI function", "object": "exReadDataObj", "class": [ "list" ], "fields": [], "table": false, "tojson": true }, { "name": "exVSTPI", "title": "TCGA ACC data set output from calculatePI function", "object": "exVSTPI", "class": [ "numeric" ], "fields": [], "table": false, "tojson": true }, { "name": "vstTCGA_ACCData_sub", "title": "TCGA ACC data set", "object": "vstTCGA_ACCData_sub", "class": [ "data.frame" ], "fields": [ "TCGA.OR.A5J1", "TCGA.OR.A5J2", "TCGA.OR.A5J3", "TCGA.OR.A5J5", "TCGA.OR.A5J6", "TCGA.OR.A5J7", "TCGA.OR.A5J8", "TCGA.OR.A5J9", "TCGA.OR.A5JA", "TCGA.OR.A5JB" ], "rows": 20501, "table": true, "tojson": true } ], "_help": [ { "page": "calculatePI", "title": "A function for calculating proliferative index from variance stabalized RNA-seq data in the ProliferativeIndex package", "topics": [ "calculatePI" ] }, { "page": "compareModeltoPI", "title": "A function for comparing proliferative indices from variance stabalized RNA-seq data to model principal componenets in the ProliferativeIndex package", "topics": [ "compareModeltoPI" ] }, { "page": "comparePI", "title": "A function for comparing proliferative indices from variance stabalized RNA-seq data in the ProliferativeIndex package", "topics": [ "comparePI" ] }, { "page": "exReadDataObj", "title": "TCGA ACC data set output from readDataForPI function", "topics": [ "exReadDataObj" ] }, { "page": "exVSTPI", "title": "TCGA ACC data set output from calculatePI function", "topics": [ "exVSTPI" ] }, { "page": "readDataForPI", "title": "A function for reading data in for use with the ProliferativeIndex package", "topics": [ "readDataForPI" ] }, { "page": "vstTCGA_ACCData_sub", "title": "TCGA ACC data set", "topics": [ "vstTCGA_ACCData_sub" ] } ], "_readme": "https://github.com/blasseigne/proliferativeindex/raw/HEAD/README.md", "_rundeps": [], "_vignettes": [ { "source": "ProliferativeIndexVignette.Rmd", "filename": "ProliferativeIndexVignette.html", "title": "ProliferativeIndex Vignette", "author": "Brittany N. Lasseigne, PhD and Ryne C. Ramaker", "engine": "knitr::rmarkdown", "headings": [ "Example Data Set", "readDataForPI function", "calculatePI function", "comparePI function", "compareModeltoPI function" ], "created": "2016-07-05 19:29:45", "modified": "2018-08-14 17:06:23", "commits": 3 } ], "_score": 3.740362689494244, "_indexed": true, "_nocasepkg": "proliferativeindex", "_universes": [ "blasseigne" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.0.1", "date": "2026-10-01T09:43:52.000Z", "distro": "resolute", "commit": "8e85e9c7c682361a81faabeb2bedf50d7f469448", "fileid": "https://r2.ropensci.org/533d425cb735a13a667a475f3a82c183d9b29f5ffdc976e7f0ef4745c20471e1", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/blasseigne/actions/runs/36844081505" }, { "r": "4.6.1", "os": "linux", "version": "1.0.1", "date": "2026-10-01T09:43:49.000Z", "distro": "resolute", "commit": "8e85e9c7c682361a81faabeb2bedf50d7f469448", "fileid": "https://r2.ropensci.org/8988ff43d61b02c8205bbbc74b44cbdd984ab06157900fa59f95e26d222bd0b9", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/blasseigne/actions/runs/36844081505" }, { "r": "4.5.3", "os": "mac", "version": "1.0.1", "date": "2026-10-01T09:44:26.000Z", "commit": "8e85e9c7c682361a81faabeb2bedf50d7f469448", "fileid": "https://r2.ropensci.org/6da591fc0c1e5c8d9ab1d23944309bd123866dd46658d63c00a6899d81a57c65", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/blasseigne/actions/runs/36844081505" }, { "r": "4.6.1", "os": "mac", "version": "1.0.1", "date": "2026-10-01T09:43:50.000Z", "commit": "8e85e9c7c682361a81faabeb2bedf50d7f469448", "fileid": "https://r2.ropensci.org/992f2f193677dd8d8ff58b97bce7c541553da8b5e482f30bb765c942a43203b8", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/blasseigne/actions/runs/36844081505" }, { "r": "4.6.0", "os": "wasm", "version": "1.0.1", "date": "2026-10-01T09:43:39.000Z", "commit": "8e85e9c7c682361a81faabeb2bedf50d7f469448", "fileid": "https://r2.ropensci.org/e0c5afdc2eb174178c09465565b2126f5fd66505b99f1a6c4a8a1ab124d5c03c", "status": "success", "buildurl": "https://github.com/r-universe/blasseigne/actions/runs/36844081505" }, { "r": "4.7.0", "os": "win", "version": "1.0.1", "date": "2026-10-01T09:43:01.000Z", "commit": "8e85e9c7c682361a81faabeb2bedf50d7f469448", "fileid": "https://r2.ropensci.org/dcf676d02e1e3607202f51e7fa939adfcdbb3d90effe625853bb107e8bb4b625", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/blasseigne/actions/runs/36844081505" }, { "r": "4.5.3", "os": "win", "version": "1.0.1", "date": "2026-10-01T09:42:52.000Z", "commit": "8e85e9c7c682361a81faabeb2bedf50d7f469448", "fileid": "https://r2.ropensci.org/c0476b62aef6f0b60a8a25c00612dd885513a59fd13492ee5692f773a6c609e0", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/blasseigne/actions/runs/36844081505" }, { "r": "4.6.1", "os": "win", "version": "1.0.1", "date": "2026-10-01T09:43:16.000Z", "commit": "8e85e9c7c682361a81faabeb2bedf50d7f469448", "fileid": "https://r2.ropensci.org/1d0a8aa0ee5a662140d874480e55a7f6a67e940d6730d3a92565def2d5e6b057", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/blasseigne/actions/runs/36844081505" } ] }